ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
BMC Bioinformatics Article download : http://www.biomedcentral.com/1471-2105/11/467
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited in their ability to handle very large amounts of sequences because the system lacks a scalable high-performance computing (HPC) environment with a greatly extended data storage capacity. Results: We designed ClustalXeed, a software system for multiple sequence alignment with incremental improvements over previous versions of the ClustalX and ClustalW-MPI software. The primary advantage of ClustalXeed over other multiple sequence alignment software is its ability to align a large family of protein or nucleic acid sequences. To solve the conventional memory-dependency problem, ClustalXeed uses both physical random access memory (RAM) and a distributed file-allocation system for distance matrix construction and pairalign computation. The computation efficiency of disk-storage system was markedly improved by imp...
The Software Download Site :
http://www.mediafire.com/?thypv8h3dxzc9q1 clustalXeed-1.0.tar.gz (linux version)
http://www.mediafire.com/?7nr42a443ugwmf6 ClustalXeed-Manual-1a.pdf (including installation)
or download both files in a zip format:
http://www.mediafire.com/?4j1af1va86pc66y
clustalXeed-1.0.tar.gz (linux version) + ClustalXeed-Manual-1a.pdf (including installation)
** The software runs on a Linux OS. For more information, send a mail to : phyjoo@inje.ac.kr
.
.
댓글 없음:
댓글 쓰기